About
GapsMis is a tool for pairwise sequence alignment with a bounded number of gaps.
GapsMis is a command-driven program implemented in the C programming language and developed under GNU/Linux operating system.
It only requires standard C libraries and gcc compiler for compilation.
libgapmis is an ultrafast library for pairwise short-read alignment, based on GapMis, including accelerated SSE-based
and GPU-based versions.
The functions made available via libgapmis can be seamlessly integrated into any short-read alignment pipeline.
System Requirements
Software:
1. 32-bit or 64-bit Linux system
Contact
Tomas Flouri
Scientific Computing Group (Exelixis Lab & HPC Infrastructure)
Heidelberg Institute for Theoretical Studies (HITS gGmbH)
Schloss-Wolfsbrunnenweg 35
D-69118 Heidelberg
Germany
Email: Tomas.Flouri@h-its.org